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slide seq  (TaKaRa)


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    TaKaRa slide seq
    Slide Seq, supplied by TaKaRa, used in various techniques. Bioz Stars score: 95/100, based on 153 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seeker+spatial+transcriptomics+kit/Seeker+Spatial+Transcriptomics+Kit/pmc13017465-3-0-1
    Average 95 stars, based on 153 article reviews
    slide seq - by Bioz Stars, 2026-09
    95/100 stars

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    Related Articles

    Sequencing:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Spatial Transcriptomics:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Transcriptomics:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Next-Generation Sequencing:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    DNA Library Preparation:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Single Cell:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Chromatin Immunoprecipitation:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Expressing:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    In Situ:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Hybridization:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Gene Expression:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Derivative Assay:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Immunohistochemistry:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00

    Activity Assay:

    Article Title: Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
    Article Snippet: ding contrast as the background, with pathway p values adjusted by the Benjamini–Hochberg method within each state and gene-set library. Four spatial transcriptomic samples ( GSE315553 , generated via Curio Bioscience Seeker technology) were sourced from the same original study as the snRNA-seq dataset [ 32 ] and processed with their physical coordinates preserved. Raw counts were normalized (10,00



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    Image Search Results


    AIR-SPACE enables the mapping of adaptive immune receptor (AIR) clonotypes and transcriptomics in situ. ( A ) Schematic of the experimental design and methodology, including the generation of long-read (LR) and short-read (SR). ( B ) Spatial mapping of cell types across the LN sections at different time points postinfection. (Scale bar, 500 μm.) ( C ) Spatial mapping of AIR clonotypes across the LN sections, with immunoglobulin (IG) clones shown in blue and T cell receptor (TCR) clones shown in red; outlined with germinal center (GC) regions in LNs from D10PI to D21PI. ( D ) Multiplexed RNA FISH staining for T cell marker Trbc2 (green), B cell marker Ms4a1 (red), and DAPI (blue) across all samples on sister sections. (Scale bar 500 μm.)

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: A temporal and spatial atlas of adaptive immune responses in the lymph node following viral infection

    doi: 10.1073/pnas.2504742123

    Figure Lengend Snippet: AIR-SPACE enables the mapping of adaptive immune receptor (AIR) clonotypes and transcriptomics in situ. ( A ) Schematic of the experimental design and methodology, including the generation of long-read (LR) and short-read (SR). ( B ) Spatial mapping of cell types across the LN sections at different time points postinfection. (Scale bar, 500 μm.) ( C ) Spatial mapping of AIR clonotypes across the LN sections, with immunoglobulin (IG) clones shown in blue and T cell receptor (TCR) clones shown in red; outlined with germinal center (GC) regions in LNs from D10PI to D21PI. ( D ) Multiplexed RNA FISH staining for T cell marker Trbc2 (green), B cell marker Ms4a1 (red), and DAPI (blue) across all samples on sister sections. (Scale bar 500 μm.)

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    Techniques: In Situ, Clone Assay, Staining, Marker